Astonishing Results When Researchers Examine Uncharted Molecular Language of the Brain

Neurons are like the electrical wiring of our bodies. They are connected by synapses, which play an important role in transferring information. Inside synapses, there are complex molecular machineries, such as synaptic vesicles (SV), that work in harmony to ensure proper neurotransmission. This research looked at the synaptic proteome — all the proteins that make up the synapses.
Credit: OIST

Neurons are like the electrical wiring of our brains, responsible for receiving information from the outside world and conveying this information to the rest of our body. To work correctly, they need to ‘speak’ to each other, and they do this via synapses — specialized structures that act as junctions between neurons. Synapses not only connect neurons but also receive, process, store, and control all the information that flows within this network. Thus, they are fundamentally important for how we operate. A failure within the synapses can influence our memory, spatial orientation, learning ability, and attention span. This failure is also at the root of many brain diseases, such as Alzheimer’s, dementia, autism, ADHD, Parkinson’s, epilepsy, and schizophrenia.

Our current knowledge of the full molecular basis of synapses is lacking but a new study, published in Proceedings of the National Academy of Sciences, will help change that. This study has created the most complete annotated resource of the proteins present in the synapses, which could be useful in future health research, such as for providing an earlier diagnosis for brain diseases and identifying more specific drug targets.

“Synapses are full of protein machineries and understanding the contents of these gives us access to so much molecular and functional information,” explained Dr. Zacharie Taoufiq, staff scientist in the Cellular and Molecular Synaptic Function Unit at the Okinawa Institute of Science and Technology Graduate University (OIST) and lead author of the paper. “We knew there were significant gaps in our current knowledge of the synaptic proteome, so we developed a method to look for all the known missing proteins. To our surprise, we found many novel and previously hidden synaptic proteins.”

Involving collaborators from OIST, Max Planck Institute for Biophysical Chemistry in Gottingen, Germany, and Doshisha University in Kyoto, Japan, the research group took a conventional ‘proteomic’ method in this field, which scientists use when they want to identify every protein in a mixture, and modified it to make it more powerful. This new method revealed many hidden sequences of peptides — the building blocks of proteins. Particularly, the group wanted to be able to identify proteins that might largely resemble other proteins but have very different functions.

The results were astonishing. In total, the group identified 4439 synaptic proteins of which 1466 were found in synaptic vesicles (SV) — three times more than had previously been known. The research group decided to take a closer look at the SV proteins. They quantified them on a plot, ranking them from most abundant to least abundant. “There was a one-million-fold difference,” said Dr. Taoufiq. “We found a few very abundant ones, which made up 90% of the total amount of SV proteins. But there was also this incredible diversity and what appears to be SV sub-populations. It seems like synaptic proteomes are structured like languages, with a few frequently used words (or proteins) and many less frequent but more specific and meaningful ones.”

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